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IEP POD Publications

Journal copyright laws often prevent access to entire articles. In such cases, please contact the study authors for reprints.

2011

  • Greene, V.E., L. J. Sullivan, J. K. Thompson, and W.J. Kimmerer.  2011. Grazing impact of an invasive clam, Corbula amurensis, on the microzooplankton assemblage of the Northern San Francisco Estuary.  Marine Ecology Progress Series. doi: 10.3354/meps09099
    Abstract access:  http://www.int-res.com/prepress/m09099.html
    Corresponding author e-mail: kimmerer@sfsu.edu

  • Phillis, Corey C., David J. Ostrach, B. Lynn Ingram, Peter K. Weber. 2011. Evaluating otolith Sr/Ca as a tool for reconstructing estuarine habitat use. Canadian Journal of Fisheries and Aquatic Sciences, 2011, 68:360-373, 10.1139/F10-152
    Abstract access: http://www.nrcresearchpress.com/doi/abs/10.1139/F10-152
    Corresponding author e-mail: djostrach@gmail.com

  • Sommer, Ted R, Francine Mejia, Kathy Hieb, Randy Baxter, Erik J Loboschefsky and Frank J Loge. 2011. Long-term shifts in the lateral distribution of age-0 striped bass Morone saxatilis in the San Francisco estuary.  In press. Transactions of the American Fisheries Society.
    Corresponding author e-mail: tsommer@water.ca.gov

  • Sommer, T., M. Nobriga, L. Grimaldo, F. Feyrer, and F. Mejia.  2011.  The Spawning Migration of Delta Smelt in the Upper San Francisco Estuary.  In press. San Francisco Estuary and Watershed Science.
    Corresponding author e-mail: tsommer@water.ca.gov

  • Wagner, R. Wayne, Mark Stacey, Larry R. Brown and Michael Dettinger. 2011. Statistical Models of Temperature in the Sacramento-San Joaquin Delta Under Climate-Change Scenarios and Ecological Implications Estuaries and Coasts 34:544–556, DOI 10.1007/s12237-010-9369-z.
    Full article access: http://water.usgs.gov/nrp/proj.bib/Publications/2011/wagner_stacey_etal_2011.pdf
    Corresponding author e-mail: mstacey@berkeley.edu

  • Winder, Monika, Alan D. Jassby and Ralph Mac Nally. 2011. Synergies between climate anomalies and hydrological modifications facilitate estuarine biotic invasions. Ecological Letters. published online: 6 JUN 2011 DOI: 10.1111/j.1461-0248.2011.01635.x
    Abstract access: http://onlinelibrary.wiley.com/doi/10.1111/j.1461-0248.2011.01635.x/full
    Corresponding author e-mail: mwinder@ucdavis.edu

2010

2009

  • Brander, S. M., I. Werner, J. W. White, L. A. Deanovic. (2009). “Toxicity of a dissolved pyrethroid mixture to Hyalella azteca at environmentally relevant concentrations.” Environmental Toxicology and Chemistry 28(7): 1493-1499. DOI: 10.1897/08-374.1
    Full article (pdf 109 kb)
    Corresponding author e-mail: smbrander@ucdavis.edu
  • Brown, L. R. and M. L. Bauer. (2010). “Effects of hydrologic infrastructure on flow regimes of California’s Central Valley rivers: Implications for fish populations.” River Research and Applications 26(6): 751-765. DOI: 10.1002/rra.1293
    Abstract
    Corresponding author e-mail: lrbrown@usgs.gov
  • Feyrer, F., T. Sommer, and S. B. Slater. (2009). “Old School vs. new School: status of threadfin shad (Dorosoma petenense) five decades after its introduction to the Sacramento-San Joaquin Delta.” San Francisco Estuary and Watershed Science 7(1).
    Full article
  • Fisch, K. M., J. L. Petersen, M. R. Baerwald, J. K. Pedroia, and B. May. (2009). “Characterization of 24 microsatellite loci in delta smelt, Hypomesus transpacificus, and their cross--species amplification in two other smelt species of the Osmeridae family.” Molecular Ecology Resources 9(1): 405 - 408. DOI: 10.1111/j.1755-0998.2008.02254.x
    Abstract
    Corresponding author e-mail: kmfisch@ucdavis.edu
  • Ger, K. A., S. J. Teh, and C. R. Goldman. (2009). “Microcystin-LR toxicity on dominant copepods Eurytemora affinis and Pseudodiaptomus forbesi of the upper San Francisco Estuary.” Science of the Total Environment 407(17): 4852-4857. DOI: 10.1016/j.scitotenv.2009.05.043
    Abstract
    Corresponding author e-mail: aligerger@gmail.com
  • Grimaldo, L. F., A. R. Stewart, and W. Kimmerer. (2009). “Dietary segregation of pelagic and littoral fish assemblages in a highly modified tidal freshwater estuary.” Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science 1(1): 200-217. DOI: 10.1577/C08-013.1
    Full article (pdf 401 kb)
    Corresponding author e-mail: lgrimaldo@usbr.gov
  • Grimaldo, L. F., T. Sommer, N. Van Ark, G. Jones, E. Holland, P. B. Moyle, ..., P. Smith. (2009). “Factors affecting fish entrainment into massive water diversions in a freshwater tidal estuary: Can fish losses be managed?” North American Journal of Fisheries Management 29(5): 1253-1270. DOI: 10.1577/M08-062.1
    Full article (pdf 647 kb)
    Corresponding author e-mail: lgrimaldo@usbr.gov
  • Kimmerer, W., E. Gross, and M. L. MacWilliams. (2009). “Is the Response of Estuarine Nekton to Freshwater Flow in the San Francisco Estuary Explained by Variation in Habitat Volume?” Estuaries and Coasts 32(2): 375-389. DOI: 10.1007/s12237-008-9124-x
    Full article (pdf 551 kb)
    Corresponding author e-mail: kimmerer@sfsu.edu
  • Lehman, P. W., S. Mayr, L. Mecum, and C. Enright. (2009). “The freshwater tidal wetland Liberty Island, CA was both a source and sink of inorganic and organic material to the San Francisco Estuary.” Aquatic Ecology 44(2): 359-372. DOI: 10.1007/s10452-009-9295-y
    Full article (pdf 102 kb)
    Corresponding author e-mail: plehman@water.ca.gov
  • Mac Nally, R., J. R. Thomson, W. J. Kimmerer, F. Feyrer, K. B. Newman, A. Sih, ..., and G. Castillo. (2010). “Analysis of pelagic species decline in the upper San Francisco Estuary using multivariate autoregressive modeling (MAR).” Ecological Applications 20(5): 1417-1430. DOI: 10.1890/09-1724.1
    Abstract
    Corresponding author e-mail: ralph.macnally@sci.monash.edu.au
  • Moisander, P. H., P. W. Lehman, M. Ochiai, and S. Corum. (2009). “"Diversity of Microcystis aeruginosa in the Klamath River and San Francisco Bay delta, California, USA.” Aquatic Microbial Ecology 57(1): 19-31. DOI: 10.3354/ame01320
    Abstract
    Corresponding author e-mail: pmoisander@pmc.ucsc.edu
  • Nobriga, M. L. (2009). “Bioenergetic modeling evidence for a context-dependent role of food limitation in California´s Sacramento-San Joaquin Delta.”
    Full article (pdf 600 kb)
    Corresponding author e-mail: matt_nobriga@fws.gov

2008

  • Jassby, A. (2008). “Phytoplankton in the upper San Francisco Estuary: Recent biomass trends, their causes and their trophic significance.” San Francisco Estuary and Watershed Science 6(1): Article 2.
    Full article
    Corresponding author e-mail: adjassby@ucdavis.edu
  • Kimmerer, W. J. (2008). “Losses of Sacramento River Chinook Salmon and Delta Smelt to Entrainment in Water Diversions in the Sacramento-San Joaquin Delta.” San Francisco Estuary and Watershed Science 6(2).
    Full article
    Corresponding author e-mail: kimmerer@sfsu.edu
  • Kimmerer, W. J. and M. L. Nobriga (2008). “Investigating Particle Transport and Fate in the Sacramento-San Joaquin Delta Using a Particle Tracking Model.” San Francisco Estuary and Watershed Science 6(1).
    Full article
    Corresponding author e-mail: kimmerer@sfsu.edu
  • Hestir, E. L., S. Khanna, M. E. Andrew, M. J. Santos, J. H. Viers, J. A. Greenberg, ..., and S. L. Ustin. (2008). “Identification of invasive vegetation using hyperspectral remote sensing in the California Delta ecosystem ” Remote Sensing of Environment 112(11): 4034-4047. DOI: 10.1016/j.rse.2008.01.022
    Abstract
    Corresponding author e-mail: elhestir@ucdavis.edu
  • Lehman, P. W., G. Boyer, M. Satchwell, and S. Waller. (2008). “The influence of environmental conditions on the seasonal variation of Microcystis cell density and microcystins concentration in San Francisco Estuary” Hydrobiologia 600(1): 187-204. DOI: 10.1007/s10750-007-9231-x
    Full article
    Corresponding author e-mail: plehman@water.ca.gov
  • Newman, K. B. (2008). “Sample Design-based Methodology for Estimating Delta Smelt Abundance.” San Francisco Estuary and Watershed Science 6(3).
    Full article
    Corresponding author e-mail: ken_newman@fws.gov
  • Nobriga, M. L., T. R. Sommer, F. Feyrer, and K. Fleming. (2008). “Long-Term Trends in Summertime Habitat Suitability for Delta Smelt (Hypomesus transpacificus).” San Francisco Estuary and Watershed Science 6(1).
    Full article (pdf 1,219 kb)
    Corresponding author e-mail: matt_nobriga@fws.gov
  • Nobriga, M. L. and F. Feyrer (2008). “Diet composition in San Francisco Estuary striped bass: does trophic adaptability have its limits?” Environmental Biology of Fishes 83(4): 495-503. DOI: 10.1007/s10641-008-9376-0
    Abstract
    Corresponding author e-mail: matt_nobriga@fws.gov
  • Ostrach, D. J., J. M. Low-Marchelli, K. J. Eder, S. J. Whiteman, J. G. Zinkl. (2008). “Maternal transfer of xenobiotics and effects on larval striped bass in the San Francisco Estuary.” Proceedings of the National Academy of Sciences 105(49): 19354-19359. DOI: 10.1073/pnas.0802616105
    Abstract
    Corresponding author e-mail: djostrach@ucdavis.edu

2007

  • Feyrer, F., M. Nobriga, and T. Sommer. (2007). “Multidecadal trends for three declining fish species: habitat patterns and mechanisms in the San Francisco Estuary, California, USA.” Canadian Journal of Fisheries and Aquatic Sciences, 64:723-734. DOI:10.1098/rsbl.2010.0373
    Full article (pdf 954 kb)
    Corresponding author e-mail: ffeyrer@mp.usbr.gov
  • Geist, J., I. Werner, K. J. Elder, and C. M. Leutenegger. (2007). “Comparisons of tissue-specific transcription of stress response genes with whole animal endpoints of adverse effect in striped bass (Morone saxatilis) following treatment with copper and esfenvalerate.” Aquatic Toxicology 85(1): 28-39. DOI: 10.1016/j.aquatox.2007.07.011
    Abstract
    Corresponding author e-mail: iwerner@ucdavis.edu
  • Lehman, P. W. (2007). “The influence of phytoplankton community composition on primary productivity along the riverine to freshwater tidal continuum in the San Joaquin River, California.” Estuaries and Coasts 30(1): 82-93. DOI: 10.1007/BF02782969
    Full article
    Corresponding author e-mail: plehman@water.ca.gov
  • Sommer, T. R., C. Armor, R. Baxter, R. Breuer, L. Brown, M. Chotkowskiet, ..., and K. Souza. (2007). “The collapse of pelagic fishes in the upper San Francisco Estuary: El Colapso de los Peces Pelagicos en La Cabecera Del Estuario San Francisco.” Fisheries 32(6): 270-277.
    Full article (pdf 873 kb)
    Corresponding author e-mail: tsommer@water.ca.gov

2006

  • Manly, B. F. J. and M. A. Chotkowski (2006). “Two new methods for Regime Change Analyses.” Archiv für Hydrobiologie 167(1-4): 593-607. DOI: 10.1127/0003-9136/2006/0167-0593
    Abstract
    Corresponding author e-mail: mchotkowski@mp.usbr.gov